Stem Cells and Mammalian Development

Course content

The course provides a comprehensive look into the molecular and cellular principles governing mammalian embryonic development, with a central focus on embryo derived stem cells and how they capture specific stages of embryonic development.  A large portion of the course will focus on pluripotency, and pluripotent stem cells. The curriculum covers fundamental mechanisms such as transcriptional regulation, signaling pathways, morphogen gradients, and their roles in patterning the early embryo. Key processes including gastrulation, neural induction, and germ layer specification are explored in detail. A major component of the course is dedicated to the biology of pluripotent stem cells (embryonic and induced), their molecular networks, and their applications in modelling development and disease. Topics include the derivation of different stem cell types from the embryo, transcription factor-mediated reprogramming (iPSCs), and the in vitro differentiation of stem cells into specific lineages, such as the germ line.

Education

MSc Programme in Molecular Biomedicine

MSc Programme in Biochemistry

MSc Programme in Biology

MSc Programme in Biology with a minor subject

MSc Programme in Biotechnology

 

MS Programs in SUND

MSc Programme in Human Biology – elective course

MSc Programme in Immunology and Inflammation – elective course

MSc Programme in Biomedical Engineering (joint with DTU) – elective course

MSc Programme in Quantitative Biology and Disease Modelling (joint with DTU) – elective course

Learning outcome

By attending the course the student will achieve:

Knowledge:

  • The molecular mechanisms of early developmental processes, including axis formation, gastrulation, and neural patterning.
  • The core principles of transcriptional and signaling networks that establish cell identity and pattern in the mammalian embryo.
  • The defining characteristics of pluripotency, the different states of pluripotent stem cells, and their molecular regulation.
  • The principles and methodologies behind generating stem cells, including iPSC reprogramming and the derivation of lineage-specific stem cells.
  • The potential and current limitations of using stem cells to model mammalian development and for regenerative applications.
  • An understanding of the relationship of pluripotency to the germ line and original totipotent cell.

 

Skills:

  • Describe and explain the key molecular mechanisms (signaling, transcriptional regulation, chromatin states) that control cell fate decisions in the early embryo.
  • Compare and contrast the process of gastrulation and germ layer specification across model systems, highlighting conserved and divergent mechanisms.
  • Detail the pathways involved in neural induction and the patterning of the neural tube along its anterior-posterior and dorsal-ventral axes.
  • Explain the unique features of preimplantation mammalian development, including the formation of extra-embryonic tissues.
  • Define the hallmarks of pluripotency and critically evaluate the differences between naïve and primed pluripotent states.
  • Describe the process of somatic cell reprogramming to generate iPSCs and discuss the factors influencing reprogramming efficiency.
  • Outline the development of the germ line and strategies for its differentiation from pluripotent stem cells in vitro.
  • Critically evaluate scientific literature in the fields of mammalian development and stem cell biology.

 

Competences:

The student will be competent to integrate complex knowledge of developmental mechanisms with stem cell biology, enabling them to understand and critically discuss current research and ethical considerations in regenerative medicine and developmental modelling.

The course will employ a mixture of lectures, discussion sessions focused on the primary literature, and group-based problem-solving sessions to foster a deep understanding of both theoretical and applied concepts. Problem sets based on the course literature are part of the course activities and preparation for the examination but are not included in the final grading. One out of two exam events is Continuous assessment during the course, where the students hand in a written essay and make an associated oral presentation during the course.

See Absalon for a list of course literature, which will comprise selected textbook chapters and primary research articles.

Basic knowledge of cell biology and molecular genetics corresponding to the Bachelor level.

Written
Oral
Collective
ECTS
7,5 ECTS
Type of assessment
Continuous assessment
On-site written exam, 2 hours under invigilation
Type of assessment details
The final grade is based on two exam events:
1) Continuous assessment: A written essay with an associated oral presentation submitted and presented during the course.

2) Written on-site examination (2 hours) held during the block exam week.  

Each examination event is assessed and weighted individually, and the final grade is determined based on this. The two exam events are weighted equally (50:50) in the final assessment.

Students must pass all examination events individually to pass the overall exam.
Aid
Only certain aids allowed (see description below)

1) Continuous assessment:
Aids: All aids allowed. Read about how to use generative AI on KUnet (link to SUND AI guidelines)

 

2) Written on-site examination:
Written aids allowed: Only notes and books are allowed.

Marking scale
7-point grading scale
Censorship form
No external censorship
Several internal examiners
Re-exam

The re-exam consists of:
1) Oral exam on basis of previous submission:
The submission (Written essay) must be handed in 2 weeks prior to the re-exam. If the submission is not fulfilled, the student cannot take the oral exam.

Aids: All aids allowed. Read about how to use generative AI on KUnet (link to SUND AI guidelines)
 

2) Written on-site examination (2 hours).

Aids: Written aids allowed: Only notes and books are allowed.
 

The oral presentation and written examination will take place on the same day in the re-exam week of the block.

Each examination event is assessed and weighted individually, and the final grade is determined based on this. The two exam events are weighted equally (50:50) in the final assessment. 

Students must pass all examination events individually to pass the overall exam. 

If ten or fewer students have signed up for re-exam, the Written on-site examination (2 hours) will be changed to oral exam:
Duration: 20 min. with 20 min. preparation and without exam aids.

Criteria for exam assessment

In order to obtain the grade 12, the student should convincingly and accurately demonstrate the knowledge, skills and competences described under Learning Outcome.

Single subject courses (day)

  • Category
  • Hours
  • Lectures
  • 28
  • Preparation
  • 107
  • Exercises
  • 21
  • Project work
  • 48
  • Exam
  • 2
  • English
  • 206

Kursusinformation

Language
English
Course number
SMOK26002U
ECTS
7,5 ECTS
Programme level
Full Degree Master
Duration

1 block

Placement
Block 2
Schedulegroup
B
Capacity
60
The number of places might be reduced if you register in the late-registration period (BSc and MSc) or as a credit or single subject student.
Studyboard
Study Board for the Biological Area
Contracting department
  • Center for Stem Cell Medicine (reNEW)
Contracting faculty
  • Faculty of Health and Medical Sciences
Course Coordinators
  • Joshua Mark Brickman   (15-6e73776c79653266766d676f7165724477797268326f7932686f)
  • Mirna Perez-Moreno   (13-726e77736633757274776a737445676e7433707a336970)
Teacher

Professors, associate and assistant professors at SUND and BIO, primarily from reNEW.

Saved on the 28-04-2026

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