Introduction to Physical Organic Chemistry

Course content

The Organic Chemistry course covers structure and mechanisms in organic chemistry with an emphasis on physical organic chemistry.

The major topics are:


-       Chemical bonding and structures (electronegativity, VSEPR, Lewis structures, hybridization, QMOT, orbital mixing);

-       Stereochemistry (configuration, conformation, chirality);

-       Conformationally, sterically and stereoelectronic effects (thermodynamic, kinetic);

-       Solutions and non-covalent binding forces (strong and weak interactions)

-       Acid-Base chemistry (definitions and implications of pH and pKa);

-       Energy surfaces and Kinetics (transition state theory, Hammond postulate, More O’Ferral-Jencks plots)

-       Isotope effects (theory and practice)

-       LFER (Hammett, Bronsted relationship, enthalpy-entropy compensation)

-       Catalysis (General and specific acid/base catalysis)

-       Organic Reaction Mechanisms (Nucleophilic substitution and elimination reactions)

And special topics related to the above topics.


The teaching will to a large extent follow the themes in the teaching book chapters, but additional literature will be used to support each topic. The additional literature will mainly be classic and contemporary articles and concepts in organic chemistry. When possible and appropriate, examples from the teachers own research will be used as examples of applied physical organic chemistry. Each topic will be introduces by the lecturer followed by discussions on the class. Exercises for each chapter will be handed out and discussed on the class based on the questions from the textbook or independently prepared quiz.

It is required that all students present at least one research paper during the course. 

Learning outcome

After passing the course the student should be able to:


Describe chemical stability and strain using physical organic chemistry.

Justify a profile of simple organic reactions using principle of kinetic and thermodynamic 


Apply the theory to identify structure-property relationship in simple molecular systems.


Explain and discuss the above topics. Analyze stability and strain of compounds and chemical systems on the basis of physical organic chemistry.

The teaching is divided into lectures by the teacher (and invited lecturers), student presentations of research papers and exercises (solved by the students at home – discussed on the class). Special topics and own experiences will be included when appropriate in the context

Course material will be indicated on Absalon

Basic competencies in physical chemistry, quantum chemistry, inorganic chemistry are necessary and intermediate competencies in organic chemistry and organic synthesis are necessary (equivalent to KemiOrg and OrgSyn).

Academic qualifications equivalent to a BSc degree is recommended.

Peer feedback (Students give each other feedback)
7,5 ECTS
Type of assessment
Written examination, 4 hours under invigilation
Type of assessment details
Written examination.
The course has been selected for ITX exam
See important information about ITX-exams at Study Information, menu point: Exams -> Exam types and rules -> Written on-site exams (ITX)
Only certain aids allowed

Text book and molecular building models are allowed.

As the exam is an ITX-exam, the University will make computers available to students at the exam. Students are therefore not permitted to bring their own computers, tablets, calculators, or mobile phones.

Marking scale
7-point grading scale
Censorship form
No external censorship
Several internal examiners

Same as ordinary exam.

Criteria for exam assessment

See Learning Outcome

Single subject courses (day)

  • Category
  • Hours
  • Lectures
  • 16
  • Preparation
  • 155
  • Theory exercises
  • 30
  • Exam
  • 5
  • English
  • 206


Course number
7,5 ECTS
Programme level
Full Degree Master

1 block

Block 3
No restrictions/no limitation
The number of seats may be reduced in the late registration period
Study Board of Physics, Chemistry and Nanoscience
Contracting department
  • Department of Chemistry
Contracting faculty
  • Faculty of Science
Course Coordinator
  • Jiwoong Lee   (11-71707e7676756e35736c6c476a6f6c7435727c356b72)

Jiwoong Lee (dnq572)
Knud J. Jensen (sjv697)
Mikkel Boas Thygesen (hqg340)

Saved on the 15-11-2023

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