Kursussøgning, efter- og videreuddannelse – Københavns Universitet

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Kursussøgning, efter- og videreuddannelse

Mammalian Genomics

Practical information
Study year 2016/2017
Time
Block 4
Programme level Bachelor
Full Degree Master
Part Time Master
Ph.D.
ECTS 7,5 ECTS
Course responsible
  • Susanna Cirera (3-7b6b7b487b7d766c36737d366c73)
  • Department of Veterinary Clinical and Animal Sciences
Course number: SBIB10170U

Course content


The course is an advanced course in theoretical and practical genomics with focus on mammals. The course will provide information that will allow the student to gain knowledge on methods and technologies currently used to dissect, describe and characterise complex genomes. Aspects of both research and application within the field of genomics will be addressed.

The students will also learn innovative thinking.

* The theoretical part of the course will cover the following topics:

1) Genome projects, Model organisms & Comparative genomics
2) Organization and content of the mammalian genome
3) Human genetic variability
4) Genetic mapping of mendelian characters
5) Mapping genes conferring susceptibility to complex diseases
6) Gene expression: focus on qPCR
7) Studying gene function in the Post-genome Era / Next generation sequencing (NGS) technology
8) Molecular pathology/Cancer/Pharmacogenetics
9) Genetic testing
10) Genetic manipulation of cells and animals. Gene therapy
11) MicroRNAs

*A case-work based on innovation will be held during the course
* Virtual-lab exercises (computer work): Labster and UCSC browser sessions will be held during the course


* The practical part of the course will contain:
1) DNA forensics /paternity testing (lecture/lab work)
2) RNA isolation /qPCR (lab work)

More information will be given at the beginning of the course.

Learning outcome

After completion of the course the student is expected to have:

Knowledge:

- Describe the architecture and components of an average mammalian genome.
- Understand the possibilities of analyzing and characterizing mammalian genomes.
- Understand qualitative and quantitative genetics with focus on mammalian disease genetics.
- Describe the technologies and methods involved in genome projects and the objectives of the different genome projects.
- Understand how comparative genomics can be used in the characterization and annotation of genomes by transfering genomic information from one species to another (comparative genomics).
- Understand the regulation of gene expression at different levels and how to study it. Focus on qPCR.

- Understand NGS technique
- Understand how mutations can cause inherited defects and predisposition to disease such as cancer and the possibilities and relevance of genetic testing.
- Understand innovation.

Skills:

- Use of basic and advanced methods in molecular genetics.
- Perform DNA sequence analysis, simple sequence assembly and annotation and detect sequence variation by using the UCSC browser.
- Perform PCR and microsatellites analysis.
- Perform quantitative PCR and analyse expression profiles of genes in different tissues.

Competences:

- Evaluation of strategies to dissect the genetics underlying inherited traits in mammals.
- Evaluate the practical use of genetic testing.
- Think more innovative in relation to Biology-Biotechnology.

Recommended prerequisites

Basic knowledge in Genetics, Cell Biology and Molecular Biology

Sign up

Biology-Biotechnology students have priority over the other educations.

Education

BSc Programme in Biology-Biotechnology
BSc Programme in Natural Sciences and IT
BSc Programme in Biology
MSc Programme in Animal-derived Foods (Food of Life)

 

Studyboard

Study Board of Biomolecular Sciences and Technology

Course type

Single subject courses (day)

Teacher

Intern and extern teachers

Duration

1 block

Schedulegroup

B
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Teaching and learning methods

Lectures, theoretical exercices during lectures, innovation-case group-work, group-presentation (pitch), computer exercise (UCSC browser) , Labster-case, Laboratory exercises
Crash-bioinformatic session
Use of clickers in different lectures.

Capacity

60 participants

Language

English

Literature

 Information about teaching material will be available at Absalon before the course starts

Workload

Category Hours
Lectures 43
Practical exercises 20
Theory exercises 12
E-Learning 3
Project work 10
Preparation 117,5
Exam 0,5
English 206,0

Exam

Type of assessment

Oral examination, 20 minutes
The 20 min. oral examination is based on the practical laboratory work and on the curriculum.
You will draw two questions during the exam, one related to the laboratory exercises and one related to the curriculum. There is no time for preparation.
The student should show adequate knowledge and understanding of both practical and curriculum related subjects in order to pass the exam.

Weight: Oral examination 100 %.

Aid

Only certain aids allowed

The students can bring their own notes.

Marking scale

7-point grading scale

Criteria for exam assessment

 

To achieve the maximum grade of 12, the shall be able to:

Knowledge:

- Describe the architecture and components of an average mammalian genome.
- Understand the possibilities of analysing and characterizing mammalian genomes, and to understand qualitative and quantitative genetics with focus on mammalian disease genetics.
- Describe the technologies and methods involved in genome projects and the objectives of the different genome projects.
- Understand how comparative genomics can be used in the characterisation of genomes by transfering genomic information from one species to another.
- Understand the regulation of gene expression on different levels and which techniques to apply to study it. Special focus on NGS and qPCR.
- Understand how mutations can cause inherited defects and predisposition to disease such as cancer and the possibilities and relevance of genetic testing.
 

Skills:

- Knowledge on how to perfom basic and advanced methods in molecular genetics.
- Knowledge on how to perfom DNA sequence analysis, simple sequence assembly and annotation and detect sequence variation by using the UCSC browser.
- Knowledge on how to perfom PCR.
- Knowledge on how to perfom quantitative PCR and analyse expression profiles of genes in different tissues.


Competences:

- Evaluation of strategies to dissect the genetics underlying inherited traits in mammals.
- Evaluate the practical use of genetic testing.

- Think more innovative in relation to Biology-Biotechnology.

 

 

In order to complete the course with the grade 12, the student should give an excellent performance during the exam displaying a high level of command of all aspects of the drawn practical and theoretical subjects. The student should show a exhaustive comprehension of all the matters/principles asked during the exam with no or only few minor mistakes/weaknesses, and he/she should be able to integrate knowledge from different subjects and areas when relevant.

 

 

Censorship form

No external censorship
2 examinators

Exam period

Week  25. The exact days will be anounced at the beginning of the course.

Re-exam

An approved written report about the practicals is prerequisite for access to oral re-examination.

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